Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAEDKSKRDSIEMSMKGCQTNNGFVHNEDILEQTPDPGSSTDNLKHSTRGILGSQEPDFKGVQPYAGMPKEVLFQFSGQARYRIPREILFWLTVASVLVLIAATIAIIALSPKCLDWW---QEGPMYQIYPRSFKDSNKDGNGDLKGIQDKLDYITALNIKTVWITSFYKSSLKDFRYGVEDFREVDPIFGTMEDFENLVAAIHDKGLKLIIDFIPNHTSDKHIWFQLSRT-RTGKYTDYYIWHDCTHENG-------------KTIPPNNWLSVYG----------------------------------------------------------------------NSSW-------------------------------------------HFDEVRNQCYFHQ--FMKEQPDLNFRNP------DVQEEIKEILRFWLTKGVDGFSLDAVKFLLEAKHLRDEIQVNKTQIPDTVTQYSELYHDFTTTQVGMHDIVRSFRQTMDQYSTE--PGRYRFMGTEAYAESIDRTVMYYGLPFIQEADFPFNNYLSM-LDTVSGNSVYEVITSWME---NMPEGKWPNWMIGGPDSSRLTSRLGN--QYVNVMNMLLFTLPGTPITYYGEEIGMGNIVAANLNESYDINTLRSKSPMQWDNSSNAGFSEASNTWLPTNSDYHTVNVDVQKTQPRSALKLYQDLSLLHANELLLNRGWFCHLRN--------DSHYVVYTRELDGIDRIFIVVLNFGESTL-LNLHNMISGLPAKMRIRLSTNSADKGSKVDTSGIFLDKGEGLIFEHNTKNLLHRQTAFRDRCFVSNRACYSSVLNILYTSC |
| 3K8K Chain:A ((26-668)) | ---------------------------------------------------------------------------------------------------------------ASPDTWDETKRADISYQLLLYSFADSDGDGYGDLNGVTQKLDYLNQLGVKALWLSPIHPCM-SYHGYDVTDYTKVNPQLGTESDFDRLVTEAHNRGIKIYLDYVMNHTGTAHPWFTEASSSSESPYRNYYSFSEDPKTDIAAGKIAMITQEGAAGYNAAEWFQVSDETAAVKGLLKFTLDWSNAPSPILVVSTGTKADEDNPDTGTDNAKYLYYGEDICKKFYDKGNNIYELTVDFESTWGLLIRTSNASFWPSGTKYGASSSSEKLALNKDFKLTNAGNPANIMFDSQQITYFHSHFCTDWFADLNYGPVDQAGESPAYQAIADAAKGWIARGVDGLRLDAVKHIYHSETS-----------------------------EENPRFLKMFYEDMNAYYKQKGHTDDFYMIGEVLSEY-DKVAPYYK-GLPALFEFSFWYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIEATKLSNHDEDRTSSKLGKSADKCKLAAAVLLTSAGHPYIYYGEELGLYGTKD--------NGDEYVRSPMLWGDSYTTNYTD--KTDATVSKNV--KTVADQQADTHSLLNIYFSLTRLRNTYPALAEGNMTKHSVYNESQEKDYKPIAAWYMTKDN--EKLLVIHNFGGTAMQLPLTDKI------EKVLFVNGETQQNTDSDSYTLKLGGYASVVFKLGN--------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3K8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -163803 for 4032 contacts (-40.6/contact) +
2D Compatibility (PS) -51865 + (NN) -15932 + (LL) 12776
1D Compatibility (HY) -22000 + (ID) 6100
Total energy: -246924.0 ( -61.24 by residue)
QMean score : 0.403
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