Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKRLLTVAAFALAGCVTVVAQDKKKEFKMPTGYAGITHEMSEFYEPVPPVVTPGTDLKGGGFTAPSDAIVLFDGKDLSAWESVKGGAA--EWDVHDGVFTVNKKKG---------DIQTKQKFNDFQMHIEWQVPTN-------ITGESQSRGNSG-IFLQGMY----EVQVLDCYNNPTYV-----NGQTGSIYKQSIPLANAMRKP-GEWNVYDI-IYTAPTFKEDGSYRTHPTVTVIQNGV-VLQNHTTILGTTEWIGFPQVKK-------------------HGAGPIILQSHGDPSEPISFRNIWIREL |
| 3NMB Chain:A ((34-259)) | ---------------------------------------------------------------------ITIFDGETFNGWRGYGKDRVPTKWTIEDGCIKFNGSGGGEAQDGDGGDLIFAHKFKNFELELEWKVAKGSNSGILYLAQEVTSKDKDGNDVLEPIYISAPEYQILDNANHPDAKLGKDNNRQSASLY-DMIPAVPQNSKPFGEWNKAKIMVYKG-------------TVVHGQNDENVLEYH---LWTKQWTDMLQASKFSEDKWPLAFELLNNCGGENHEGFIGLQDHGD---DVWFRNIRVKVL |
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General information:
TITO was launched using:
| RESULT:
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Template: 3NMB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -69959 for 1223 contacts (-57.2/contact) +
2D Compatibility (PS) -19008 + (NN) -2854 + (LL) 4208
1D Compatibility (HY) -11600 + (ID) 3300
Total energy: -102513.0 ( -83.82 by residue)
QMean score : 0.225
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