Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQA-LHLTCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQRSPDRE---GSFYVYDVKVD------DRPAFHRKMEAAGIMAGLVSRRNDEHSCVAHLRT----------SLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 4LC3 Chain:A ((16-379)) | -FLPFTRPEIDEETIQGVVEVLRSGWITTGPQCQKFEAALSEYCGGRPVRVFNSGTCTLEIGLRIAGVGPG-DEVITTPASWVSTSNVIIETGATPVFADIDPVTRNIDLDKLEQAITPRTKAIIPVFLSGLPVDMDRLYAI----ARAHKLR--VIEDAAQAFGSTWHGKRIGAIGDLVSFSFHANKNLTTIEGGALVLNNEDEAVLAQKYRLQGITRTG---FDGMDCDVLGGKYNLTDVAARVGLGQLPHLERFTAQRRALARAYFAAFDGGAAAKLGVGLPVAEFENGNWHMFLVTLPLERLTITRAEFMAQMKERGIGTGI-------HYPAIHLFTLYRARGFKEGMFPHAERYGASTVTLPLFTQMTEGDVRRVV------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LC3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -214683 for 2971 contacts (-72.3/contact) +
2D Compatibility (PS) -37790 + (NN) -16925 + (LL) 1560
1D Compatibility (HY) -19600 + (ID) 5900
Total energy: -293338.0 ( -98.73 by residue)
QMean score : 0.484
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