Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | SNAMPFLPDPGEPSPLKVVIAGAGYVGTCLAVTLAGRGAEVVAVDSDPGTVADLRAGRCRLPEPGLAGAVRDLAATGRLTASTSY-DPVGAADVVIVTVGTPTDAG--HEMVTDQLVAACEQIAPRLRAGQLVILKSTVSPGT---TRTLVAPLLESGGLVHERDFGLAFCPERLAEGVALAQVRTLPVVVGGCGPRSAAAAERFWRSALGVDVRQVP----SAESAEVVKLATNWWIDANVAIANELARYCAVLGVDVLDV---IGAANTLPKGSSMVNLLLPGVGVGGSCLTKDPWMAWRDGRDRGVPLRTVETARAVNDDMPRHTAAVIADELVKLGRDRNDTTIAVLGAAFKNDTGDVRNTPVRGVVAALRDSGFRVRIFDP----LADPAEIVARFGTAPAASLDEAVSGAGCLAFLAGHRQFHELDFGALAERVDEPCLVFDGRMHLPPARIRELHRFGFAYRGIGR |
| 4A7P Chain:A ((9-442)) | ---------------VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRRGDGHADLS-YVFAAAREIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPNSGA------KVVSNPEFLREGAAIEDFKRPDRVVVGTEDEFARQVMREIYRPLS------PVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGMDNRI--------FLHAGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDARKRAMGRKV---IKAMGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAAD----GADALVIVTEWDAFRALDLTRIKNSLKSPVLV-DLRNIYPPA---ELERAGLQYTGVGK |
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General information:
TITO was launched using:
| RESULT:
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Template: 4A7P.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -250691 for 3461 contacts (-72.4/contact) +
2D Compatibility (PS) -44871 + (NN) -22490 + (LL) 1956
1D Compatibility (HY) -24000 + (ID) 6850
Total energy: -346946.0 ( -100.24 by residue)
QMean score : 0.404
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