Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MGDTGLRKRREDEKSIQSQEPKTTSLQKELGLISGISIIVGTIIGSGIFVSPKSVLSNTEAVGPCLIIWAACGVLATLG-ALCFAELGTMITKSGGEYPYLMEAYGPIPAY---LFSWASLIVIKPTSFAIICLSFSEYVCAPFYVGCKPPQIV-VKCLAAAAILFISTVNSLSVRLGSYVQNIFTAAKLV-IVAIIIISGLVLLAQGNTKNFDNSFEGAQLSVGAISLAFYNGLWAYDGWNQLNYITEELRNPYRNLPLAIIIGIPLVTACYILMNVSYFTVMTATELLQSQAVAVTFGDRVLYPASWIVPLFVAFSTIGAANGTCFTAGRLIYVAGREGHMLKVLSYISVRRLTPAPAIIFYGIIATIYIIPGDINSLVNYFSFAAWLFYGLTILGLIVMRFTRKELERPIKVPVVIPVLMTLISVFLVLAPIISKPTWEYLYCVLFILSGLLFYFLFVHYKFGWAQKISKPITMHLQMLMEVVPPEEDPE |
| 3LRB Chain:A ((8-337)) | ---------------------------HKVGLIPVTLMVSGNIMGSGVFLLP----ANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFLGYQTNVLYWLACW-IGNIAMVVIGVGYLSY----FFPILKDPLVLTITCVVVLWIFVL--LNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGETYMAAWNVSGLG---TFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVCYVLSTTAIMGMIPN---------------T----AGAIVSFCAAAGCLGSLGGWTLLAGQTAKAAADDGLFPPIFARVN-KAGTPVAGLIIVGILMTIFQLSSISPNATKEFGLVSSVSVIFTLVPYLYTCAALLLLGHGHFGKARPAYLAVTTIAFLYCIWAVVGSGAKEVMWSFVTLMVITAMYALNYNRLHKNP------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 3LRB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -237232 for 2642 contacts (-89.8/contact) +
2D Compatibility (PS) -30613 + (NN) 2445 + (LL) 6148
1D Compatibility (HY) -28000 + (ID) 3800
Total energy: -291052.0 ( -110.16 by residue)
QMean score : 0.187
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