Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MADKQISLPAKLINGGIAGLIGVTCVFPIDLAKTRLQNQQNG------QRVYTSMSDCLIKTVRSEGYFGMYRGAAVNLTLVTPEKAIKLAANDFFRHQL---SKDGQKLTLLKEMLAGCGAGTCQVIVTTPMEMLKIQLQDAGRIAAQRKILAAQGQLSAQGGAQPSVEAPAAPRPTATQLTRDLLRSRGIAGLYKGLGATLLRDVPFSVVYFPLFANLNQLGRPASEEKSPFYVSFLAGCVAGSAAAVAVNPCDVVKTRLQSLQRGVNEDTYSGILDCARKILRHEGPSAFLKGAYCRALVIAPLFGIAQVVYFLGIAESLLGLLQDPQA |
| 4C9Q Chain:A ((23-302)) | ---QETNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKKE-GYGKWFAGNLASGGAAGALSLLFVYSLDF-------------ARTRLAADAKS-----ARQF--------NGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLKPL----------FLASFLLGWVVTTGASTCSYPLDTVRRRM--MMTSGQAVKYNGAIDCLKKIVASEGVGSLFKG--CGANILRSVAGAGVISMYDQLQMILFGK------ |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9Q.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -71078 for 1892 contacts (-37.6/contact) +
2D Compatibility (PS) -26741 + (NN) -2887 + (LL) 3268
1D Compatibility (HY) -15600 + (ID) 3600
Total energy: -116638.0 ( -61.65 by residue)
QMean score : 0.213
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