Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MAATASAGAGGIDGKPRTSPKSVKFLFGGLAGMGATVFVQPLD----LVKNRMQLSGEGAKTREYKTSFHALTSILKAEGLRGIYTGLSAGLLR----QATYTTTRLGIYTVL-FERLTGADGTPPGFLLKAVIGMTAGATGAFVGTPAEVALIRMTADGRLPADQRRGYKNVFNALIRITRE----EGVLTLWRGCIPTMARAVVVNAAQLASYSQSKQFLLDSGYFSDNILCHFCASMISGLVTTAASM---PVDIAKTRIQNMRMIDGKP-EYKNGLDVLFKVVRYEGFFSLWKGFTPYYARLGPHTVLTFIFLEQMNKAYKRLFLSG |
4C9J Chain:A ((25-291)) | ------------------TNFAINFLMGGVSAAIAKTAASPIERVKILIQNQDEMIKQGTLDKKYSGIVDCFKRTAKQEGLISFWRGNTANVIRYFPTQALNFAFKDKIKLMFGFKK---EEGYGKWFAGNLASGGAAGALSLLFVYSLDFARTRLAADAK---S-----ARQFNGLTDVYKKTLKSDGIAGLYRGFMPSVVGIVVYRGLYFGMFDSLK----------------F---LLGWVVTTGASTCSYPLDTVRRR---MMMTSGQAVKYNGAIDCLKKIVASEGVGSLFKGCGANILRSVAGAGVISMYDQLQMILFGKKF--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9J.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -30695 for 1584 contacts (-19.4/contact) +
2D Compatibility (PS) -23826 + (NN) -18 + (LL) 2252
1D Compatibility (HY) -12000 + (ID) 3250
Total energy: -67537.0 ( -42.64 by residue)
QMean score : 0.222
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