Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MASDPIFTLAPPLHCHYGAFPPNASGWEQPPNASGVSVASAALAASAASRVATSTDPSCSGFAPPDFNHCLKDWDYNGLPVLTTNAIGQWDLVCDLGWQVILEQILFILGFASGYLFLGYPADRFGRRGIVLLTLGLVGPCGVGGA---------AAGSSTGVMALRFLLGFLLAGVDLGVYLMRLELCDPTQRLRVA---LAGELVGVGGHFLFLGLALV-----------------SKDWRFLQRMITAPCILF--LFYGWPGLFLESARWLIVKRQIEEAQSVLRILAERNRPHGQMLGEEAQEALQDLENTCPLPATSSFSFASLLNYRNIWKNLLILG-----------FTNFIAHAIRHCYQP--VGGGGSPSDFYLCSLLASGTAALACVFLGV-TVDRFGRRGILLLSMTLTGIASLVLLGLWDCEHPIFPTVWAQQGNPNRDLNEAAITTFSVLGLFSSQAAAILSTLLAAEVIPTTVRGRGLGLIMALGALGGLSGPAQRLHMGHGAFLQHVVLAACALLCILSIMLLPETKRKLLPEVLRDGELCRRPSLLRQPPPTRCDHVPLLATPNPAL |
4JA3 Chain:A ((76-342)) | ----------------------------------------------------------------------------------------------------------------------GYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVP----ESPRWLMSRGKQEQAEGILR------KIMGNTL---ATQAVQEIKH-------------SLDHGR----------GVIVIGVMLSIFQQFVGINVVLYYAPEV------STDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEALAIAVAAQWLANYFVSWTFPMMDKNSHNGFSYWIYGCMGVLAALFMWKFVPE----------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JA3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -80859 for 1263 contacts (-64.0/contact) +
2D Compatibility (PS) -21485 + (NN) -10169 + (LL) 12576
1D Compatibility (HY) -16400 + (ID) 3150
Total energy: -119487.0 ( -94.61 by residue)
QMean score : 0.085
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