Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MDFLMSGLAACGACVFTNPLEVVKTRMQLQGELQAPGTYQRHYRNVFHAFITIGKVDGLAALQKGLAPALLYQFLMNGIRL-------GTYGLAEAGGYLHTAEGTHSPARSAAAGAMAGVMGAYLGSPIYMVKTHLQAQAASEIAVGHQYKHQGMFQALTEIGQKHGLVGLWRGALGGLPRVIVGSSTQLCTFSSTKDLLSQWEIFPPQSWKLALVAAMMSGIAVVLAMA----PFDVACTRLYNQPTDAQGKGLMYRGILDALLQTARTEGIFGMYKGIGASYFR-LGPHTILSLFFWDQLRSLYYTDTK |
4C9H Chain:A ((25-313)) | IDFLMGGVSAAVAKTAASPIERVKLLIQNQDEMLKQGTLDRKYAGILDCFKRTATQEGVISFWRGNTANVIRYFPTQALNFAFKDKIKAMFGFKKEEGYAKWFAG------NLASGGAAGALSLLFVYSLDYARTRLAADS-------AR-QFNGLIDVYKKTLKSDGVAGLYRGFLPSVVGIVVYRGLYFGMYDSLK------------------LASFLLGWVVTTGASTCSYPLDTVRRRMMM----TSGQAVKYDGAFDCLRKIVAAEGVGSLFKGCGANILRGVAGAGVISMY--DQLQMILFGKKF |
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General information:
TITO was launched using:
| RESULT:
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Template: 4C9H.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -84414 for 1888 contacts (-44.7/contact) +
2D Compatibility (PS) -26820 + (NN) -1507 + (LL) 2588
1D Compatibility (HY) -16000 + (ID) 3250
Total energy: -129403.0 ( -68.54 by residue)
QMean score : 0.206
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