Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKLKKILGLLGLALAAAFVLTACGQKNDKNTLTVGVMTMTDSDKERWDKIEELLKKENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAETYISPINLFSGTENGKAKYSSAKEIPNGGQIAIPNDATNESRALYVLQDAGLIKLNVSGDEL-ATVKNIKSNPKNLDI-KEVDASQTARNLAS--VDAAVVNNSYAVPAKIDF-KTSLYKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHTDAVKKVIKKTAKGVDEPVW |
| 4EF1 Chain:A ((3-245)) | ----------------------------DSVLKVGASPV--PHAEILEHVKPLLEKEGVKLEVTTYTDYVLPNKALESGDIDANYFQHVPFFNEAVKENDYDFVNAGAIHLEPVGLYS------KKYKSLQEIPDGSTIYVSSSVSDWPRVLTILEDAGLITLKEGVDRTTATFDDIDKNTKKLKFNHESDPAIMTTLYDNEEGAAVLINSNFAVDQGLNPKKDAIALEKES---SPYANIIAVRKE---DENNENVKKLVKVLRSKEVQDWITKKWNGAIVPVN |
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General information:
TITO was launched using:
| RESULT:
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Template: 4EF1.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -25322 for 1994 contacts (-12.7/contact) +
2D Compatibility (PS) -25336 + (NN) -11309 + (LL) 2460
1D Compatibility (HY) -15600 + (ID) 4150
Total energy: -79257.0 ( -39.75 by residue)
QMean score : 0.417
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