Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MTLNLSVDEVLTTTRSVRKRLDFDKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDESAVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFRPAKRLPAESVTHWNGW
3M5K Chain:A ((5-172))
---ENQTLETILNRKSVRKYK--DRPVEKEKIDKLIRAGMAAPSSRDRRPWEFIIVTDRKALDTMAEGLP-----------F----------------------ARMLKETRQAIVVCGDTIKSS--N---AWFLDCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEIVRKELRLPD-HIMPLNVIPVGYPMQ-KETPKNKYNVQQ-IHHNGW
General information:
TITO was launched using:
RESULT:
Template:
3M5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -106206 for 1265 contacts (-84.0/contact) +
2D Compatibility (PS) -18208 + (NN) -9743 + (LL) 1688
1D Compatibility (HY) -6800 + (ID) 1750
Total energy: -141019.0 ( -111.48 by residue)
QMean score : 0.453
(partial model without unconserved sides chains):
PDB file :
Tito_3M5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3M5K-query.scw
PDB file :
Tito_Scwrl_3M5K.pdb
: