Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----RKVDYSTFLQEVNNDQVREA--------RINGREINVTKKDSN---RYTTYIPVQDPKL-LDNLLTKN---VKVVGE----------------
1FNF Chain:? ((1142-1235))
PLSPPTNLH----LEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA
General information:
TITO was launched using:
RESULT:
Template:
1FNF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -1392 for 308 contacts (-4.5/contact) +
2D Compatibility (PS) -6249 + (NN) -433 + (LL) 248
1D Compatibility (HY) -4000 + (ID) 550
Total energy: -12376.0 ( -40.18 by residue)
QMean score : 0.382
(partial model without unconserved sides chains):
PDB file :
Tito_1FNF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1FNF-query.scw
PDB file :
Tito_Scwrl_1FNF.pdb
: