Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MTGLLSNFRNTIIVSFVLALVIVIGYGHSPHGHDATYFQAIFRWLHVLFGILWIGLLYYFNFVQIRVMPQIPAELKPAVSKYIAPEALFWFRWAALATWVMGVLLAYNRGYLVEAFTLGLAGGYTPGVDMGFTFIGTGMWLATVMFFNVWVFIWPNQKIALGIVEADADAKAKAAKTAMLVSRTNTLLSIPMLATMAMHQTLFG |
M040 Chain:A ((100-140)) | ---------------------------------------------------------------------------------------------------VMGVLLAYNRGYLVEAFTLGLAGGYTPGVDMGFTFIGTG------------------------------------------------------------------ |
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General information:
TITO was launched using:
| RESULT:
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Template: M040.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -14256 for 162 contacts (-88.0/contact) +
2D Compatibility (PS) -4131 + (NN) 669 + (LL) 16112
1D Compatibility (HY) -7200 + (ID) 1950
Total energy: -10756.0 ( -66.40 by residue)
QMean score : -0.034
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