Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTYANREVLAHFFP---S---PGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKG-RVGLGVCTNRSTS-MDMVLRLFSLDSYFS-IVMTASRV-TNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAPL-------------PAAYRMEHHREIIDLLG
4EEK Chain:A ((26-244))
-------APFDAVLFDLDGVLVESEGIIAQVWQSVLAERGLHLD---LTEIAMYFTGQRFDGVLAYLAQQHDFVPPPDFLDVLETR----FNAAMT-GVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLTELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPERCVVIEDSVTGGAAGLAAGATLWGLLVPGHPHPDGAAALSRLGAARVLTSHAELRAAL-
General information:
TITO was launched using:
RESULT:
Template:
4EEK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -131689 for 1567 contacts (-84.0/contact) +
2D Compatibility (PS) -21261 + (NN) -9079 + (LL) 240
1D Compatibility (HY) -6000 + (ID) 2200
Total energy: -169989.0 ( -108.48 by residue)
QMean score : 0.419
(partial model without unconserved sides chains):
PDB file :
Tito_4EEK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4EEK-query.scw
PDB file :
Tito_Scwrl_4EEK.pdb
: