Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEETNITGVTVP-DSVISIGRLAFAYCNSLSDVKLSENLIYINELAFASCDALK-EITIPASVEKMD-NPFRWSNALDTVYMEGMVAPE
3SB4 Chain:A ((227-304))
----------------------------------------------------------------------------------------NLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLA-------
General information:
TITO was launched using:
RESULT:
Template:
3SB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -65487 for 486 contacts (-134.7/contact) +
2D Compatibility (PS) -7527 + (NN) 2122 + (LL) 6948
1D Compatibility (HY) -5200 + (ID) 1000
Total energy: -70144.0 ( -144.33 by residue)
QMean score : 0.186
(partial model without unconserved sides chains):
PDB file :
Tito_3SB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SB4-query.scw
PDB file :
Tito_Scwrl_3SB4.pdb
: