Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-MLTVEVEVKITADDENKAEEIVKRVIDEVERE--VQKQY------PNATITRTLTRDDGTVELRIK-VKADTEEKAKSIIKLIEERIEEELRKRDPNATITRTVRTEV------GSSWSLEHHHHHH
1GD0 Chain:A ((1-118))
PMFIVNTNVP----RASVPDGFLSELTQQLAQATGKPPQYIAVHVVPDQLMAFG-GSSEPCALCSLHSIGKIGGAQNRSYSKLLCGLLAERL-RISPDRVYINYYDMNAANVGWNNSTFALEHH----
General information:
TITO was launched using:
RESULT:
Template:
1GD0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8067 for 626 contacts (12.9/contact) +
2D Compatibility (PS) -11084 + (NN) -2653 + (LL) 776
1D Compatibility (HY) -6400 + (ID) 850
Total energy: -12144.0 ( -19.40 by residue)
QMean score : 0.577
(partial model without unconserved sides chains):
PDB file :
Tito_1GD0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1GD0-query.scw
PDB file :
Tito_Scwrl_1GD0.pdb
: