Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MNKRLLTVAAFALAGCVTVVAQDKKKEFKMPTGYAGITHEMSEFYEPVPPVVTPGTDLKGGGFTAPSDAIVLFDGKDLSAWESVKGGAAEWDVHDGVFTVNKK----KGDIQTKQKFNDFQMHIEWQVPTNITGESQSRGNSGIFLQGM------------YEVQVLDC---YNNPTYVNGQTGSIYKQ-SIPLANAMRKPGEWNVYDIIYTAPTFKEDGSYRTHPTVTVIQNGVVLQNHTTILGTTEWIGFPQVKKHGAGPIILQSHG-----DPSEPISFRNIWIREL |
| 4JQT Chain:A ((2-190)) | ------------------------------------------------------------------QTWEPLFNGKNLKGWKKLNG-KAEYKIVDGAIVGISKMGTPNTFLATTKNYGDFILEFDFKIDD--------GLNSGVQLRSESKKDYQNGRVHGYQFEIDPSKRAWSGGIYDEARRNWLYPLTLNPAAKTAFKNNAWNKARIEAIGN------------SIRTWINGVPCANIWDD-------------MTPSGFIALQVHAIGNASEEGKTVSWKDIRICT- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4JQT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -60542 for 1322 contacts (-45.8/contact) +
2D Compatibility (PS) -18116 + (NN) -5066 + (LL) 4944
1D Compatibility (HY) -6000 + (ID) 2000
Total energy: -86780.0 ( -65.64 by residue)
QMean score : 0.289
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