Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNSRRDFLKKGALAGFSALMIPEIAKAAVKENTSVHAPKINLKKDCVILFQGDSITDCGRDRNSNRCNTMEQFGSGYVLFTATQLLEGKAALQPKIYNRGISGNKVYQLRERWEIDCLAFQPDVLSILIGVNDYWHTLTHGYKGT----VETYENDLRALLKYTKEKLPNTQIVLCEPFTLRDGAAIEDSKWYPMFDEFRKSARKLSEEFNTIFVPFQSGFDAAVKLAPARYWSNDGVHPDLPGRQLMANMWMEATGLK
4JHL Chain:A ((1-213))
----------------------------------------MKIGSGEKLLFIGDSITDCGRARPEGE-GSFGALGTGYVAYVVGLLQAVYPELGIRVVNKGISGNTVRDLKARWEEDVIAQKPDWVSIMIGINDVWRQYDLPFMKEKHVYLDEYEATLRSLVLETKPLVK--GIILMTPFYIEGNE---QDPMRRTMDQYGRVVKQIAEETNSLFVDTQAAFNEVLKTLYPAALAWDRVHPSVAGHMILARAFLREIGF-
General information:
TITO was launched using:
RESULT:
Template:
4JHL.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -120257 for 1766 contacts (-68.1/contact) +
2D Compatibility (PS) -22903 + (NN) -12097 + (LL) 3496
1D Compatibility (HY) -18400 + (ID) 3350
Total energy: -173511.0 ( -98.25 by residue)
QMean score : 0.399
(partial model without unconserved sides chains):
PDB file :
Tito_4JHL.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4JHL-query.scw
PDB file :
Tito_Scwrl_4JHL.pdb
: