Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
SSSVWGV----AFSP--DGQTIASASDDKTVKLWNRN--------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTL---TGHSSSVWGVAFSPDGQ----------TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH
4BPE Chain:R ((22-246))
-DWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT--------
General information:
TITO was launched using:
RESULT:
Template:
4BPE.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -41540 for 1533 contacts (-27.1/contact) +
2D Compatibility (PS) -21905 + (NN) -18285 + (LL) 596
1D Compatibility (HY) -11200 + (ID) 3500
Total energy: -95834.0 ( -62.51 by residue)
QMean score : 0.423
(partial model without unconserved sides chains):
PDB file :
Tito_4BPE.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4BPE-query.scw
PDB file :
Tito_Scwrl_4BPE.pdb
: