Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKTSVWGKSILALVFTFMCSLAISAASPKDYLYDTKEENGKIISKVVFLQE---NGLLNKQVRYEFQYNENGKVSEKKAFRWDRTNDEWVPFYQITYQYDDQSGEIKTNYGMWDKKKKNFSLNVQNMIIPSTNYEEIFS
3MSW Chain:A ((2-113))
------------------------TNNGKQFIHNDTMEGGKLVCREIYAMNDAASGILNPVKMYKYSYDTDQQKTVKSTYAWNIFKNTWETESRTVISRYET--ETSVEYSVWNKEKGSFDL-SKKYIYITDNNNQLIA
General information:
TITO was launched using:
RESULT:
Template:
3MSW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -396 for 604 contacts (-0.7/contact) +
2D Compatibility (PS) -11702 + (NN) -2033 + (LL) 2168
1D Compatibility (HY) -4800 + (ID) 1050
Total energy: -17813.0 ( -29.49 by residue)
QMean score : 0.290
(partial model without unconserved sides chains):
PDB file :
Tito_3MSW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3MSW-query.scw
PDB file :
Tito_Scwrl_3MSW.pdb
: