Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQALH-LTC-GDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVP-GLELLQRSPDREGSFYVYDVKVDDRPAFHRKMEAAGIMAGLVS-RRNDEHSCV---AHLRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 3UWC Chain:A ((14-367)) | -----QFADIE-PYLNDLREFIKTADFTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLNI-GAGDEVITCANTFIASVGAIVQAGATPVLVDSEN-GYVIDPEKIEAAITDKTKAIMPVHYTGNIADMPALAKIAKK----HNL--HIVEDACQTILGRINDKFVGSWGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLIN-------RDVCVEYGINCRMDTIQAVIANRLMNQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVKYRDQLFQYLKDNGIEVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREF- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3UWC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -202857 for 3000 contacts (-67.6/contact) +
2D Compatibility (PS) -38017 + (NN) -17787 + (LL) 1348
1D Compatibility (HY) -18800 + (ID) 3950
Total energy: -280063.0 ( -93.35 by residue)
QMean score : 0.444
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