Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GFDPEK-AQCCLVENGQILTHGS-------------GGKGYGLASTGVTSGCYQWKFYIVKENRGNEGTCVGVSRWPVHDFN---HRTTSDMWLYRAYSGNLYHNGEQTL-TLSSFTQGDFITCVLDMEARTISFGKNGE--EPKLAFED-VDAAELYPCVMFYS---SNPGEKVKICDMQMR
2VOK Chain:A ((19-191))
-LDRNTANSWLIISKDRRQVRMGDTHQNVSDNKERFSNYPMVLGAQRFSSGKMYWEVDVTQ---KEAW-DLGVCRDSVQRKGQFSLSPENGFWTIWLWQD-SYEAGTSPQTTLHIQVPPCQIGIFVDYEAGVVSFYNITDHGSLIYTFSECVFAGPLRPFFNVGFNYSGGNAAPLKLCP----
General information:
TITO was launched using:
RESULT:
Template:
2VOK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -74532 for 1095 contacts (-68.1/contact) +
2D Compatibility (PS) -16318 + (NN) -7728 + (LL) 560
1D Compatibility (HY) -8800 + (ID) 1350
Total energy: -108168.0 ( -98.78 by residue)
QMean score : 0.338
(partial model without unconserved sides chains):
PDB file :
Tito_2VOK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2VOK-query.scw
PDB file :
Tito_Scwrl_2VOK.pdb
: