Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | --MARRTEPPDG------GWGWVVVLSAFFQSALVFGVLRSFGVFFVEFVAAFEEQAARVSWIASIGIAVQQFGSPVGSALSTKFGPRPVVM------TGGILAALGMLLASFATSLTHLYLSIGLLSGSGWALTFAPTLACLSCYFSRRRSLATGLALTGVGLSSFTFAPFFQWLLSHYA-WRGSLLLVSALSLHLVACGALLRPPS---LAEDPAVGGPRAQLTSLLHHGPFLRYTVALTLINTGYFIPYLH--LVAHLQDLDWDPLPAAFLLSVVAISDLVGRVVSGWLGDAVPGPVTRLLMLWTTLTGVSLALFPVAQAPTALVALAVAYGFTSGALAP--LAFSVLPELIGTRRIYCGLGLLQMIESIG---GLLGPPLSGYLRDVTGNYTAS---FVVAGAFLLSGSGILLTLPHFFCFSTTTSGPQDLVTEALDTKVPLPKEGLEED |
| 4LYP Chain:A ((34-449)) | SEFAFVKIASDGKGFTRYGEPYLIRGANYWQ-GMNLGADDCSG-------GDRKRMELEIKQMAEMGINNLRVMASSEGPDDQPYRMRPSMMPQPGKYNEGVFVGLDYLLDTMDRYNMTAVMTLGNFW--QWSGGFGQYVAWITGNQTIPYPV-----------GDVTYDEFTQFAARFYNDSEIAPKANKLFKDHIYTVQNRRNTVNGKIYKEDPVIMS--WQIANEPQEAPASWFEEISTFIKKGAPKHLVSAGLESKLDEYDFDRAHDHKNIDYTTCHCWVEN--WGIYDPADPDGLPHANEYMHDFLESRSKWAAQLNKPIVMEEFGMA---RDAWRNPEDETYKYLPSTPTSHKDEYYQKAFNQIVSLASNRSFSGSNFWAYGGEGRSTYPPNPYGMVWLGDPPHEPHGW---------YSVYSNDTTVQIIKDYNANLLKVQKELSK- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4LYP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -340341 for 3448 contacts (-98.7/contact) +
2D Compatibility (PS) -40114 + (NN) -8027 + (LL) 2568
1D Compatibility (HY) -7200 + (ID) 2850
Total energy: -395964.0 ( -114.84 by residue)
QMean score : 0.195
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