Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MLLSWLTVLGAGMVVLHFLQKLLFPYFWDDFWFVLKVVLIIIRLKKYEKRGELVTVLDKFLSHAKRQPRKPFIIYEGDIYTYQDVDKRSSRVAHVFLNHSSLKKGDTVALLMSNEPDFVHVWFGLAKLGCVVAFLNTNIRSNSLLNCIRACGPRALVVGADLLGTV-EEI----LPSLSE--NISVWGMKDSVPQGVISLKEKLSTSPDEPVPRSHHVVSLLKSTCLYIFTSGTTGLPKAAVISQLQ-VLRGSAVLWAFGCTAHDIVYITLPLYHSSAAI-LGISGCVELGATCVLKKKFSASQFWSDCKKYDVTVFQYIGELCRYLCKQSKREGEKDHKVRLAI--GNGIRSDVWREFLDRFGNIKVCELYAATESSISFMNYTGRIGAIGRTNLFYKLLST-FDLIKYDFQKDEPMRNEQGWCIHVKKGEPGLL-ISRVNAKNPFFGYAGPYKHTKDKLLCDVFKKGDVYLNTGDLIVQDQDNFLYFWDRTGDTFRWKGENVATTEVADVIGM-LDFIQEANVYGVAISGYEGRAGMASIILKPNTSLDLEKVYEQVVTF-LPAYACPRFLRIQEKMEATGTFKLLKHQLVEDGFNPLKISEPLYFMDNLKKSYVLLTRELYDQIMLGEIKL |
| 1MDB Chain:A ((24-533)) | ----------------------------------------------------GETFGDLLRDRAAKYGDRIAITCGNTHWSYRELDTRADRLAAGFQKL-GIQQKDRVVVQLPNIKEFFEVIFALFRLGALPVFALPSHRSSEITYFCEFAEAAAYIIPDAYSGFDYRSLARQVQSKLPTLKNIIV-AGEAE---EFLP----LEDLHTEPV---KLPEVKSSDVAFLQLSGGSTGLSKLIPRTHDDYIYSLKRSVEVCWLDHSTVYLAALPMAHNYPLSSPGVLGVLYAGGRVVLSPSPSPDDAFPLIEREKVTITALVPPLAMVWMDAASSRRDDLSSLQVLQVGGAKFSAEAARRVKAVFGC-TLQQVFGMAEGLVNYTRLDD-P-EEIIVNTQGKPMSPYDESRVWDDHD-----------RDVKPGETG-HLLTRGP--YTIRGYYKAEEHNAASFT------EDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHP-AVHDAAMVSMPDQF-LGERSCVFIIPRDE-APKAAELKAFLRERGLAAYKIPDRVEFVESFPQTGVGKVSKKALREAISEKLLAG------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1MDB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -317086 for 4286 contacts (-74.0/contact) +
2D Compatibility (PS) -52169 + (NN) -13411 + (LL) 10372
1D Compatibility (HY) -12800 + (ID) 4800
Total energy: -389894.0 ( -90.97 by residue)
QMean score : 0.391
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