Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRALSLLLALCLCLSLMPAASASVVESTVQVGPYTFEIWFDGTATLTRYDESLAGSTYADIPASVTDENGQEYPVTVIGEKAFEET-NITGVTVPDSVISIGRLAFAYCNSLS-DVKLSENLIYINELAFASCDALKEITI-PASVEKMD-NPFRWSNALDTVYMEGMVAPE
3SB4 Chain:A ((237-328))
---------------------------------------------------------------------------NATTIPDFTFAQKKYLLKIKLPHNLKTIGQRVFSNCGRLAGTLELPASVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK-------
General information:
TITO was launched using:
RESULT:
Template:
3SB4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -72521 for 602 contacts (-120.5/contact) +
2D Compatibility (PS) -8669 + (NN) 1751 + (LL) 5916
1D Compatibility (HY) -4400 + (ID) 900
Total energy: -78823.0 ( -130.94 by residue)
QMean score : 0.223
(partial model without unconserved sides chains):
PDB file :
Tito_3SB4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3SB4-query.scw
PDB file :
Tito_Scwrl_3SB4.pdb
: