Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISF--TAPSAGKLTLVFA--EAA--A--TAKVDGNKVT-----ASNG-----IITVDLAQGAHTITKAD---ACNLFYMEYAAHHHHHH
3ZM8 Chain:A ((47-132))
--------------------------------------------------SDKITFQISSATTKLYDLSIRYAAIYGDKRTNVVLNNGAVSEVFFPAGDSFTSVAAGQVLLNAGQNTIDIVNNWGWYLIDSITLTP------
General information:
TITO was launched using:
RESULT:
Template:
3ZM8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -29100 for 338 contacts (-86.1/contact) +
2D Compatibility (PS) -6815 + (NN) 4077 + (LL) 2188
1D Compatibility (HY) -3600 + (ID) 500
Total energy: -33750.0 ( -99.85 by residue)
QMean score : 0.139
(partial model without unconserved sides chains):
PDB file :
Tito_3ZM8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ZM8-query.scw
PDB file :
Tito_Scwrl_3ZM8.pdb
: