Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGG---HPGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNI--KHRGRVRESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
4DUR Chain:A ((547-789))
--DCGKP--QVEPKKCPGRVVGGCVAHPHSWPWQVSLRTRFGMHFCGGTLISPEWVLTAAHCLEKSPR-PSSYKVILGAH--QEVNLEPHVQEIEVSRLFLEPTRKDIALLKLSSPAVITDKVIPACLPSPNYVVADRTECFITGWGET---FGAGLLKEAQLPVIENKVCNRYEFLNGRVQSTELCAGHLAGGTDSCQGDSGGPLVCFEKDKYILQGVTSWGLGCARPNKPGVYVRVSRFVTWIEGVMR--------
General information:
TITO was launched using:
RESULT:
Template:
4DUR.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -154030 for 1969 contacts (-78.2/contact) +
2D Compatibility (PS) -25582 + (NN) -13326 + (LL) 676
1D Compatibility (HY) -18800 + (ID) 4850
Total energy: -215912.0 ( -109.66 by residue)
QMean score : 0.492
(partial model without unconserved sides chains):
PDB file :
Tito_4DUR.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DUR-query.scw
PDB file :
Tito_Scwrl_4DUR.pdb
: