Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAETLMEPV-VSMVRYYEQFGEMPKCIVVGVYE---------PKQEDVTVVEEVG-----RPINESARFFEFVSAELVPYIQGKYPIADLK-GVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEEFSHALA--AGVPNRLFYYMATA--DVENKVVYDKAIQFERAMRSAPVHESVEYHFVDFKGSSVNAAKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
| 2GZS Chain:A ((13-265)) | --------------------FSATSFDSVDGTRHYRVWTAVPNTTAPASGYPILYMLDGNAVMDRLDDELLKQLS---EKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHRKSGGSNNFRQLLETRIAPKVEQGLNIDRQRRGLWGHSYGGLFV-LDSWLSSSY-FRSYYSASPSLGRGYDALLSRVTAVEPLQFCTKHLAIMEGSA-----GVLSKIHTTLTILKDK----GVNAVFWDFPNLGHGPMFNASFRQALLDISGE------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2GZS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -152699 for 1807 contacts (-84.5/contact) +
2D Compatibility (PS) -23766 + (NN) -12790 + (LL) 13576
1D Compatibility (HY) -4800 + (ID) 1750
Total energy: -182229.0 ( -100.85 by residue)
QMean score : 0.228
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