Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MMVMKRPSLRQFSWLLGGSLLLGALFWLWLAVQQQEATLAIRPVGQGIGMPDGFS-VWHHLDANGIRFKSITPQ-----KDGLLIKFDSTAQGAAAKEVLGRALPHGYIIALLEDDNSPTAWLSRLRDAPHRLG
2DGX Chain:A ((553-632))
----------------------------------NGADVQVSNIDYRLSRKELQQLLQEAFARHG-KVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLA-------------------
General information:
TITO was launched using:
RESULT:
Template:
2DGX.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -42993 for 547 contacts (-78.6/contact) +
2D Compatibility (PS) -8074 + (NN) -1166 + (LL) 4328
1D Compatibility (HY) -2000 + (ID) 400
Total energy: -50305.0 ( -91.97 by residue)
QMean score : 0.182
(partial model without unconserved sides chains):
PDB file :
Tito_2DGX.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2DGX-query.scw
PDB file :
Tito_Scwrl_2DGX.pdb
: