Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MIPFNAPPVVGTELDYMQSAMGSGKLCGDGGFTRRCQQWLEQRFGSAKVLLTPSCTASLEMAALLLDIQPGDEVIMPSYTFVSTANAFVLRGAKIVFVDVRPDTMNIDETLIEAAITDKTRVIVPVHYAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTIGHIGCFSFHETKNYTAGGEGGATLINDKALIERAEIIREKGTNRSQFFRGQVDKYTWRDIGSSYLMSDLQAAYLWAQLEAADRINQQRLALWQNYYDALAPLAKAGRIELPSIPDGCVQNAHMFYIKLRDIDDRSALINFLKE-AEIMAVFHYIP-LHGCPAGEHFGEFHGEDRY--TTKESERLLRLPLFYNLSPVNQRTVIATLLNYFS |
| 4K2M Chain:A ((87-437)) | -------------LNTLTEVLPTGKF-TSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGLNPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANRYKLKVIEDACQGIGLT----DLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFE-----VNVKN-KKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSE--DHVWHLFPIKVRT-EDRADIMTKLNEDFGVQTDVYYPILSHMQKTP-LVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHVI- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K2M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -270064 for 3020 contacts (-89.4/contact) +
2D Compatibility (PS) -38561 + (NN) -21313 + (LL) 1380
1D Compatibility (HY) -21200 + (ID) 5150
Total energy: -354908.0 ( -117.52 by residue)
QMean score : 0.479
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