Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGPVAGNYVHDFTANGTSSSFYTIAGNLSTSKGTATYNGKTLTQCLKMETATSISFTA---PSAGKLTLVFA--EA--AA--TAKVDGNKVT----ASNG-------IITVDLAQGAHTITKAD------ACNLFYMEYAAHHHHHH
4KMQ Chain:A ((992-1081))
------------------------------------------------AEKEAVEFDIDAVDGASDYTMEVRYSAGVEDATRTVYINGKKQQITLPKTANWDTWNTVEVPVTLQAGNNQVVFDFEADDTAGINFDHVV---------
General information:
TITO was launched using:
RESULT:
Template:
4KMQ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -23759 for 327 contacts (-72.7/contact) +
2D Compatibility (PS) -6772 + (NN) 3631 + (LL) 2412
1D Compatibility (HY) -3200 + (ID) 550
Total energy: -28238.0 ( -86.35 by residue)
QMean score : 0.163
(partial model without unconserved sides chains):
PDB file :
Tito_4KMQ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4KMQ-query.scw
PDB file :
Tito_Scwrl_4KMQ.pdb
: