Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTYANREVLAHFFPS--------PGDWEEAVRCAGAIDYRELV---PLMIMEEGFREALDTLKG-RVGLGVCTNRSTSMDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFGIGPREALFVGDSEVDRLSAEAAGVPFVAYKAPL---------PAAYRMEHHREIIDLLG
4G9B Chain:A ((3-222))
-------MKLQGVIFDLDGVITDTAHLHFQAWQQIAAEIGISID----AQFNESLKGISRDESLRRILQHGGKEGDFNSQERAQLAYRKNL-LYVHSLRELTVNAVLPGIRSLLADLRAQQISVGLASVS-LNAPTILAALELREFFTFCADASQLKNSKPDPEIFLAACAGLGVPPQACIGIEDAQAGIDAINASGMRSVGIGAGLTGAQLLLPSTESLTWPRLSAFWQNVA
General information:
TITO was launched using:
RESULT:
Template:
4G9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146725 for 1543 contacts (-95.1/contact) +
2D Compatibility (PS) -21516 + (NN) -11050 + (LL) 328
1D Compatibility (HY) -10000 + (ID) 1900
Total energy: -190863.0 ( -123.70 by residue)
QMean score : 0.436
(partial model without unconserved sides chains):
PDB file :
Tito_4G9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4G9B-query.scw
PDB file :
Tito_Scwrl_4G9B.pdb
: