Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MRPVFILGIILLLVGCKQRDERVLMVDEQGSFAVGGTVLVDSLGHTFHGDHAYVFYQKPVGARKYPLVFAHGVGQFSKTWETTPDGREGFQNIFLRRRFCVYLVDQPRRGNAGRGTESVTISPAFDEEVWFNRFRVGIWPDYFEGVQFKRDKETLDQYFRQMTPTIGTTDFEVYSDAYAALFDKIGPGVFITHSQGGPVGWNTLLKTRNIKAIASYEPGGAVPFPEGQLPEEAKFITLSKKMEGIEVPMSVFMEYTKVPIVIYYGDNLPETDERPELYEWTRRLRLMKIWAKMLN-DQGGDVTVIHLPEVGLHGNTHFPMSDLNNIEVADLLSEWLHTKALD |
2I3D Chain:A ((29-232)) | ---------------------------------------NGPAG-RLE-----GRYQPSKEKSAPIAIILHPHPQFGGTMNN--QIVYQLFYLFQKRGFTTLRFNFRSIGRSQGEF---------D-----------------------HGAGEL-------------SDAASALDWVQSLHPDSKSCWVAGYSFGAWIGMQLLMRRPEIEGFMSIAPQPNTY-D---F---------------------SFLAPCPSSGLIINGDADKVAP-----------EKDVNGLVEKLKTQKGILITHRTLPGA-----NHFF-N-GKVDELMGECEDYLDRR--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2I3D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -89597 for 1791 contacts (-50.0/contact) +
2D Compatibility (PS) -22080 + (NN) -12043 + (LL) 9440
1D Compatibility (HY) -2000 + (ID) 1800
Total energy: -118080.0 ( -65.93 by residue)
QMean score : 0.311
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