Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
-----------MTLNLSVDEVLTTTRSVRKRLDF----DKPVPRDVLMECLELALQAPTGSNSQGWQWVFVEDAAKKKAIADVYLANARGYLSGPAPEYPDGDTRGERMGRVRDSATYLAEHMHRAPVLLIPCLKGREDE-SAVGGVSFWASLFPAVWSFCLALRSRGLGSCWTTLHLLDNGEHKVADVLGIPYDEYSQGGLLPIAYTQGIDFRPA-KRLPAESVTHWNGW
3GFD Chain:A ((34-255))
SVEHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEINYMKRM-----GKRWVTDLKKLRTNWIK--EYLDTAPVLILIFKQVHGFNGKKKVHYYNEISVSIACGLLLAALQNAGLVTVTTTPL---NCGPRLRVLLGRP-SHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVTVHH
General information:
TITO was launched using:
RESULT:
Template:
3GFD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -103119 for 1375 contacts (-75.0/contact) +
2D Compatibility (PS) -22372 + (NN) -15166 + (LL) 528
1D Compatibility (HY) -5200 + (ID) 2050
Total energy: -147379.0 ( -107.18 by residue)
QMean score : 0.468
(partial model without unconserved sides chains):
PDB file :
Tito_3GFD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3GFD-query.scw
PDB file :
Tito_Scwrl_3GFD.pdb
: