Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
FEKCGKRVDRLDQRRSKLRVVGGH--PGNSPWTVSLRNRQGQHFCGGSLVKEQWILTARQCFSSCHMPLTGYEVWLGTLFQNPQHGEPSLQRVPVAKMVCGPSGSQLVLLKLERSVTLNQRVALICLPPEWYVVPPGTKCEIAGWGETKGTGNDTVLNVALLNVISNQECNIKHRGRV-RESEMCTEGLLAPVGACEGDYGGPLACFTHNSWVLEGIIIPNRVCARSRWPAVFTRVSVFVDWIHKVMRLGHHHHHH
1SI5 Chain:H ((495-724))
-------------------VVNGIPTRTNIGWMVSLRYR-NKHICGGSLIKESWVLTARQCFPSR--DLKDYEAWLGIHDVHGRGDEKCKQVLNVSQLVYGPEGSDLVLMKLARPAVLDDFVSTIDLPNYGSTIPEKTSCSVYGWGYTGLINYDGLLRVAHLYIMGNEKCSQ------LNESEICAGAEKIGSGPCEGDYGGPLVCEQHKMRMVLGVIVPGRGCAIPNRPGIFVRVAYYAKWIHKIILTYK-----
General information:
TITO was launched using:
RESULT:
Template:
1SI5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -171290 for 1818 contacts (-94.2/contact) +
2D Compatibility (PS) -24067 + (NN) -9585 + (LL) 2216
1D Compatibility (HY) -16800 + (ID) 4800
Total energy: -224326.0 ( -123.39 by residue)
QMean score : 0.398
(partial model without unconserved sides chains):
PDB file :
Tito_1SI5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SI5-query.scw
PDB file :
Tito_Scwrl_1SI5.pdb
: