Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | AMIPLFKVAVSPTALDRVAEVFASGYLGQGPRVAEFESALAARLGNPRVVSVHSGTSGLCLALRLLDAPEERDEVLSTPLTFEATNWAILADGRRITWVDVDPATLTMDLDDLERKISPATRAIIVVHWTGYPVDLDRLAGILDRAEREHGFRPAVIEDCAHAWGASYRGVPLGSHGNMCVFSFQALH-L-TCGDGGLLTLPGDELHERAMLRRFYGIDRTADRLRGAYDVAEWGLKWHMTDLNAAIGLANLETVDEQLRLHRENAAFYDKELTGVPGLELLQ-RSPDREGSFYVYDVKVD--DRPAFHRKMEA-AGIMAGLVSRRN-DEH--SCV--AHLRTSLPGLDSVYDRMVSLPVGWWLTEQDREHVVATIRSGW |
| 4K2M Chain:A ((85-436)) | ------------DILNTLTEVLPTGKFTSGPYLEQFEKVLSTYLHKRYVIATSSGTDAIMIGLLALGL-NPGDEVIMPANSFSATENAVLASGGVPIYVDINPQTFCIDPDKIEEAITPYTKFILPVHLYGKHSDMQHIRQIANR----YKL--KVIEDACQGIGLT----DLGKYADITTLSFNPYKNFGVCGKAGAIATDNEELAKKCIQFSYHGFEVNV----KNKKVINFGFNSKMDNLQAAIGLERMKYLSLNNFKRLFLADRYITQLAELQNKGYIELPELSEDHVWHLFPIKVRTEDRADIMTKLNEDFGVQTDVYYPILSHMQKTPLVQDKYAGLQLVHTEKAHSQVLHLPLYPSFTLEEQDRVMEGLFHV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4K2M.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -219346 for 2937 contacts (-74.7/contact) +
2D Compatibility (PS) -37515 + (NN) -18507 + (LL) 2088
1D Compatibility (HY) -21600 + (ID) 4100
Total energy: -298980.0 ( -101.80 by residue)
QMean score : 0.490
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