Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNEPIILRYFPVLGRAQALRHALADAELAFRDLRIP-LEQWSQHKDSDAGGPYGSLPTLRWHGVEVAETIAIASFLARSLGHYEGRDNGEIARLEAVVSLCYTEVSLQIAQLLWLDLFNPGVDLAAAVPLQFGR-LVARLTRLEAHT--PEAGWFGGERPVMADYFAAEAIEALRYLLGREHDDALRTRLPHLCALARRMAQRPALAQAWSTRPQTFTAHPDEAAMLERLRALPLAATIGASME
1VF1 Chain:A ((3-221))
--AKPVLYYFNGRGKMESIRWLLAAAGVEFEEVFLETREQYEKLLQS-GILMFQQVPMVEIDGMKLVQTRAILNYIAGKYNLY-GKDLKERALIDMYVGGTD-DLMGFLLSFPFLS----AEDKVKQCAFVVEKATSRYFPAYEKVLKDHGQDFLVGNRLSWADIHLLEAILMVEEK-K----SDALSGFPLLQAFKKRISSIPTIKKFLAPGS--KRKPISDDKYVETVRRVLR---------
General information:
TITO was launched using:
RESULT:
Template:
1VF1.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -146143 for 1636 contacts (-89.3/contact) +
2D Compatibility (PS) -23775 + (NN) -16387 + (LL) 1616
1D Compatibility (HY) -11200 + (ID) 2050
Total energy: -197939.0 ( -120.99 by residue)
QMean score : 0.482
(partial model without unconserved sides chains):
PDB file :
Tito_1VF1.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1VF1-query.scw
PDB file :
Tito_Scwrl_1VF1.pdb
: