Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | ATMAFHPMLCRLELSVSAAPPASPIDATLLRSLITSVLNSSWVDLGGNTANEKVLCAIGLIEAFCRERVIPPTSNSFNTSVTYHIMVEDLDPDDLGNIQLINKPLLSLEGDLKVLGSYQLTFQTIPGHSEPRSMTDNGIYHSDSPFFQIALGHALLGTGKIYDHITRALRVAPITIAPEKRKEPLSSYMV |
1OTF Chain:A ((10-52)) | ---------------------------------------------EGRTDEQKETLIRQVSEAMANSLDAPLER--------VRVLITEMPKNHFG---------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1OTF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -11744 for 187 contacts (-62.8/contact) +
2D Compatibility (PS) -5008 + (NN) -6726 + (LL) 9320
1D Compatibility (HY) -800 + (ID) 350
Total energy: -15308.0 ( -81.86 by residue)
QMean score : 0.116
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