Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKYLTIVIALVTLQSAFSQVISETFSSGRLNRKQKIGIYKPEKYTDRQAYPLIVVLNAE-----TLME---PVVSMVRYYEQFGEMPKCIVVGVYEPKQEDVTVVEEVGRPINESARFFEFVSAELVPYIQGKYPI--ADL-KGVIASEEAGFLANYYMLAEKKPTFNMIVSLNPVALPRMGEEF-SHALAAGVPNRLFYYMATADVENKVVYDKAIQFERAMRSAPVHESVEYHFVDFKGSSVNA-AKLQGIAQALDMCFDIYKPIGGKEFKTQMETLETGIYEYLENKYNTIYKQLGVKKVPILNDVMATYTAINSSQDWESLKKLAKYVESNGYLKTAMPNFFLAEYYEKIGDDKKALKTYQKAYTEPNIDFITGDLINERITHLQATKRKSKHTKVIEPIEPTEEVAPAQEEQNPTDESNQN |
1JJF Chain:A ((33-259)) | ---------------------VNISYFSTATNSTRPARVYLPPGYSKDKKYSVLYLLHGIGGSENDWFEGGGRANVIADNLIAEGKIKPLIIVTPNTNAAGP--------GIADGYENFTKDLLNSLIPYIESNYSVYTDREHRAIAGLSMGGGQS-FNIGLTNLDKFAYIGPISAAPNTYPNERLFPDGGKAAREKLKLLFIACGTNDS--LIGFGQRVHEYCVAN----NINHVYWLIQGGGHDFNVWKPGLWNFLQMADE-------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 1JJF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -142321 for 1788 contacts (-79.6/contact) +
2D Compatibility (PS) -23119 + (NN) -9975 + (LL) 14748
1D Compatibility (HY) -7600 + (ID) 1350
Total energy: -169617.0 ( -94.86 by residue)
QMean score : 0.220
|
|
|