Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKST---HADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGIL-MTANGNFRVNCFFRKVQNKYVIHQIRIDKTDE
3DUK Chain:A ((16-124))
----------------------EVLNVYMNAAESGTGEEMSAAFHKDATIFGYVGDKLAFNGPIKDLYDWHNSNGPA-KNVQSRITNIDIVGTVAHARVEAENWTNFKFSDLFLLLKLDGKWTIVNKVFHLH--
General information:
TITO was launched using:
RESULT:
Template:
3DUK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -34901 for 718 contacts (-48.6/contact) +
2D Compatibility (PS) -11296 + (NN) -505 + (LL) 2768
1D Compatibility (HY) 800 + (ID) 500
Total energy: -43634.0 ( -60.77 by residue)
QMean score : 0.401
(partial model without unconserved sides chains):
PDB file :
Tito_3DUK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DUK-query.scw
PDB file :
Tito_Scwrl_3DUK.pdb
: