Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GHMKFTDQQIGVLAGLAISPEWLKQNIAANQLVYGIVKPSDTV--PAGVDDYSYLVAADDQDGTIIFFKAEGQTVIIKYTSQRNTKLKAKALTLSQLKKEFYQTRSQKREVDDYVAGLRTE
3DMK Chain:A ((43-81))
------------------------------------KEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAV----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3DMK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5017 for 124 contacts (-40.5/contact) +
2D Compatibility (PS) -4078 + (NN) -2194 + (LL) 6708
1D Compatibility (HY) -800 + (ID) 300
Total energy: -5681.0 ( -45.81 by residue)
QMean score : 0.121
(partial model without unconserved sides chains):
PDB file :
Tito_3DMK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DMK-query.scw
PDB file :
Tito_Scwrl_3DMK.pdb
: