Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKLKKILGLLGLALAAAFVLTACGQKNDKNTLTVGVMTMTDSDKERWDKIEELLK-KENIKLKFKEFTDYSQPNKALKNGEIDINSFQHYNFLNNWNKENKGDLVTVAETYISPINLFSGTENGKAKYSSAKEIPNGGQIAIPNDATNESRALYVLQDAGLIKLNVSGDELATVKNIKSNPKNLDIKEVDASQTARNLASVDAAVVNNSYAVPAKIDF-KTSLYKEKVNEGSKQWINIIAAQKNWKKSKKAAAIKKLIKAYHTDAVKKVIKKTAKGVDEPVW |
3TQW Chain:A ((4-240)) | ------------------------------MVRVGTIAGP--ETQLMEVAKQVALNRYGLHVNIITFSDYNTPNEALADGSVDANMFQHLPYLKAQIEMRGYKIVSIGKTFVYPMGLYS------KKITALTQLKTGAKIAVPSDPSNEARALLLLEKAQLIQLKTH--INATPMDIASNPKKLKIVELDAAQLSRSLGDVDLAAINTNYAIPAGLSPSRDALLTEGPN---SPYANVVAVRED---DKNDPRLKQLVSALHSPAVLSAAKKIFGDGAIPA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3TQW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -36730 for 1987 contacts (-18.5/contact) +
2D Compatibility (PS) -24747 + (NN) -8241 + (LL) 2272
1D Compatibility (HY) -15200 + (ID) 3750
Total energy: -86396.0 ( -43.48 by residue)
QMean score : 0.330
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