Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDLPDIVNMYFDADSCNDTDALSETFAPDAVVEDE-GARHQGVVAILRWWVAAKKAA-SYVAEPLESTVDGDKALVRAKVSGRFPGSPVTLT--YSFTIKDGRIARLEIQ
3K0Z Chain:A ((38-142))
----HAAQRFYAFWDTGKEELIPQTVTENFFDHTLPKGRPQGTEGLKFAAQNFRKIVPNIHCEIEDLLVVGDKVTARLSFTGTHNDKKIDFFAIDILHVKDGKITEDWH-
General information:
TITO was launched using:
RESULT:
Template:
3K0Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -40584 for 659 contacts (-61.6/contact) +
2D Compatibility (PS) -10914 + (NN) -4763 + (LL) 288
1D Compatibility (HY) 2000 + (ID) 800
Total energy: -54773.0 ( -83.12 by residue)
QMean score : 0.418
(partial model without unconserved sides chains):
PDB file :
Tito_3K0Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3K0Z-query.scw
PDB file :
Tito_Scwrl_3K0Z.pdb
: