Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKRVIFLLTGLFIWTSVLLAQNVPEGVIGAFKEGNSQELNKYLGDKVDLIIQNKSTHADKRTAEGTMAAFFSNHKVGSFNVNHQGKRDESGFVIGI--LMTANGNF----RVNCFFRKVQNKYVIHQIRIDKTDE
1NWW Chain:A ((26-131))
----------------------KIVLEFMDALTSNDAAKLIEYFAEDTMYQNMPLPPAYGRDAVEQTLAGLFTVMSIDAVETFHIGSSNGLVYTERVDVLRALPTGKSYNLSILGVFQLTEGK--ITGWR------
General information:
TITO was launched using:
RESULT:
Template:
1NWW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -30183 for 658 contacts (-45.9/contact) +
2D Compatibility (PS) -10565 + (NN) 374 + (LL) 3252
1D Compatibility (HY) -4400 + (ID) 700
Total energy: -42222.0 ( -64.17 by residue)
QMean score : 0.291
(partial model without unconserved sides chains):
PDB file :
Tito_1NWW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NWW-query.scw
PDB file :
Tito_Scwrl_1NWW.pdb
: