Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAVSSNGGAIKAVIYDCDGVMFDSFEANLAFYQRIMEMMGRPRLSRDNEEQMRILHTY-------------ANREVL----AHFF---PSPGDWEEAVRCAGAIDYRELVPLMIMEEGFREALDTLKGRVGLGVCTNRSTS-MDMVLRLFSLDSYFSIVMTASRVTNPKPHPEPLLKVLEHFG-IGPREALFVGDSE-VDRLSAEAAGVPFVAYKAP-------LPAAYRMEHHREIIDLLG
3ED5 Chain:A ((5-231))
-------KRYRTLLFDVDDTILDFQAAEALALRLLFEDQNIPLT-N---DMKAQYKTINQGLWRAFEEGKMTRDEVVNTRFSALLKEYGYEADGALLEQKY----RRFLEEGHQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLFPFFKDIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHTLIIGDSLTADIKGGQLAGLDTCWMNPDMKPNVPEIIPTYEIRKLEELYHILN
General information:
TITO was launched using:
RESULT:
Template:
3ED5.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -139076 for 1521 contacts (-91.4/contact) +
2D Compatibility (PS) -22084 + (NN) -18734 + (LL) 256
1D Compatibility (HY) -7600 + (ID) 1800
Total energy: -189038.0 ( -124.29 by residue)
QMean score : 0.443
(partial model without unconserved sides chains):
PDB file :
Tito_3ED5.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3ED5-query.scw
PDB file :
Tito_Scwrl_3ED5.pdb
: