Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEHSEGAPGDPAGTVVPQELLEEMLWFFRVEDASPWNHSILALAAVVVIISMVLLGRSIQASRKEKMQPPEKETPEVLHLDEAKDHNSLNNLRETLLSEKPNLAQVELELKERDVLSVFLPDVPETES
2JP3 Chain:A ((20-38))
--------------------------------------GGLIFGGLLCIAGIALALSGKCKCRRNHTPSSLPEKVTPLITPGSAST------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2JP3.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5063 for 68 contacts (-74.5/contact) +
2D Compatibility (PS) -2161 + (NN) -2839 + (LL) 4788
1D Compatibility (HY) -1600 + (ID) 150
Total energy: -7025.0 ( -103.31 by residue)
QMean score : -0.150
(partial model without unconserved sides chains):
PDB file :
Tito_2JP3.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2JP3-query.scw
PDB file :
Tito_Scwrl_2JP3.pdb
: