Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
AVGIGAVFLGFLGAAGSTMGAASMTLTVQARNLLSGIVQQQSNLLRAPEAQQHLLKLTVWGIKQLQARVLAVERYLRDQQLLGIWGCSGKLICCTNVPWNSSWSNRNLSEIWDNMTWLQWDKEISNYTQIIYGLLEESQNQQEKNEQDLLALD
3CYO Chain:A ((3-85))
--------------------------TVQARQLLSGIVQQQNDLLRAIEAQQHLLQLTVWGIKQL----------------------------------------------------MEWDREINNYTSLIHSLIEKSQNQQEKNEQELLE--
General information:
TITO was launched using:
RESULT:
Template:
3CYO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 8006 for 343 contacts (23.3/contact) +
2D Compatibility (PS) -7778 + (NN) -1068 + (LL) 5344
1D Compatibility (HY) -9200 + (ID) 2800
Total energy: -7496.0 ( -21.85 by residue)
QMean score : 0.184
(partial model without unconserved sides chains):
PDB file :
Tito_3CYO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3CYO-query.scw
PDB file :
Tito_Scwrl_3CYO.pdb
: