Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
GEGVSYSDGHFLTKSGGVINFRKTRVTSITITILGNYGLRVVNGELQ----NTPLTFKGADFK------SSTLKDELLIPLEGAVQLNTAPSTALCIFITTDHVYRELCMMQFLTDVDKTPFLVVLRSESKHETIQYMHIVTVHPFLSLTA
4DOO Chain:A ((94-165))
--------------------------------VYGKLNIRSVRNAFQESVGNRLKKFGGSDNDELLQSFTSLFKDEYKIPRNSTIDLTKDPGHVLSVAIEGNHV-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
4DOO.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -24719 for 280 contacts (-88.3/contact) +
2D Compatibility (PS) -6369 + (NN) -2148 + (LL) 5912
1D Compatibility (HY) -3600 + (ID) 1000
Total energy: -31924.0 ( -114.01 by residue)
QMean score : 0.035
(partial model without unconserved sides chains):
PDB file :
Tito_4DOO.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4DOO-query.scw
PDB file :
Tito_Scwrl_4DOO.pdb
: