Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
---KDAELQEREYHLKELREQLAKQTVAIAELTEELQSKCIQLNKLQ-----------------------------
1NYH Chain:A ((1271-1346))
LSFVDIVLSKAASALDEKEKQLAVANEIIRSLSDEVMRNEIRITSLQGDLTFTKKCLENARSQISEKDAKINKLME
General information:
TITO was launched using:
RESULT:
Template:
1NYH.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 3158 for 168 contacts (18.8/contact) +
2D Compatibility (PS) -5313 + (NN) -6910 + (LL) 0
1D Compatibility (HY) -2000 + (ID) 650
Total energy: -11715.0 ( -69.73 by residue)
QMean score : 0.725
(partial model without unconserved sides chains):
PDB file :
Tito_1NYH.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1NYH-query.scw
PDB file :
Tito_Scwrl_1NYH.pdb
: