Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQIADCAAHDESPGNNVVDISVPPTTD
1YZK Chain:A ((17-184))
YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIYRI------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1YZK.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -110152 for 1352 contacts (-81.5/contact) +
2D Compatibility (PS) -18478 + (NN) -8888 + (LL) 1080
1D Compatibility (HY) -23600 + (ID) 8200
Total energy: -168238.0 ( -124.44 by residue)
QMean score : 0.480
(partial model without unconserved sides chains):
PDB file :
Tito_1YZK.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1YZK-query.scw
PDB file :
Tito_Scwrl_1YZK.pdb
: